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EGS-ABG : European Graduate School in Animal Breeding and Genetics


Publications

Articles published by EGS-ABG Phd candidates
TitleJournalAuthorsYear of publication
Genetic correlation between composition of bovine milk fat in winter and summer, and DGAT1 and SCD1 by season interactions Journal of Dairy Science S. Duchemin, H. Bovenhuis, W. M. Stoop, A. C. Bouwman, J.A. M. van Arendonk, and M. H. P.W.Visker 2012
QTL fine mapping with Bayes C(pi): a simulation study Genetic Selection Evoluation I. Van den Berg, S. Fritz and D. Boichard 2013
Prediction of heterosis using genomewide SNP-marker data: application to egg production traits in white Leghorn crosses Heredity E. N. Amuzu-Aweh, P. Bijma, B. P. Kinghorn, A. Vereijken, J. Visscher, J. AM. van Arendonk and H. Bovenhuis 2013
On the relationship between an Asian haplotype on chromosome 6 that reduces androstenone levels in boars and the differential expression of SULT2A1 in the testis BMC Genetics A. M. Hidalgo, John WM Bastiaansen, Barbara Harlizius, Hendrik-Jan Megens, Ole Madsen, Richard PMA Crooijmans and Martien AM Groenen 2014
Concordance analysis for QTL detection in dairy cattle: a case study of leg morphology Genetic Selection Evolution I. Van den Berg, S. Fritz, S. Rodriguez, D. Rocha, M. Boussaha, M.S. Lund and D. Boichard 2014
A quantitative trait locus on Bos taurus autosome 17 explains a large proportion of the genetic variation in de novo synthesized milk fatty acids Journal of Dairy Science S.I. Duchemin, M.H.P.W. Visker, J.A.M. Van Arendonk, H. Bovenhuis 2014
Characterization of cellular and humoral immune responses after IBV infection in chicken lines differing in MBL serum concentration Viral Immunology R.M. Kjærup, T.S. Dalgaard, R.M. Norup, E. Hamzic, P. Sørensen, H.R. Juul-Madsen 2014
Asian low-androstenone haplotype on pig chromosome 6 does not unfavorably affect production and reproduction traits Animal Genetics A. M. Hidalgo, J. W. M. Bastiaansen, B. Harlizius, E. F. Knol, M. S. Lopes, D. J. de Koning and M. A. M. Groenen 2014
Genetic connections between dressage and show-jumping horses in Dutch Warmblood horses Acta Agriculturae Scandinavica G. Rovere, P. Madsen, E. Norberg, J. A. M. van Arendonk & B. J. Ducro 2014
Large-scale Investigation of the Parameters in Response to Eimeria maxima Challenge in Broilers Journal of Animal Science E. Hamzic, B. Bed’Hom, H. Juin, R. Hawken, M.S. Abrahamsen, J.M. Elsen, B. Servin, M.H. Pinard-van der Laan, and O. Demeure 2015
Annotation and genetic diversity of the chicken collagenous lectins Molecular immunology E. Hamzic, M-H. Pinard-van der Laan, B. Bed’hom, H. R Juul-Madsen 2015
The effect of rare alleles on estimated genomic relationships from whole genome sequence data BMC Genetics S. E. Eynard, J. J. Windig, G. Leroy, R. van Binsbergen and M. PL Calus 2015
Accuracy of predicted genomic breeding values in purebred and crossbred pigs G3: Genes - Genomes - Genetics A. M. Hidalgo , J. W. M. Bastiaansen, M. S. Lopes, B. Harlizius, M. A. M. Groenen and D. J. de Koning 2015
Predicting heterosis for egg production traits in crossbred offspring of individual White Leghorn sires using genome-wide SNP data Genetics Selection Evolution E. N. Amuzu-Aweh, H. Bovenhuis, D. J. de Koning and P. Bijma 2015
Accuracy of genomic prediction using deregressed breeding values estimated from purebred and crossbred offspring phenotypes in pigs Journal of Animal Science A. M. Hidalgo , J. W. M. Bastiaansen, M. S. Lopes, R. Veroneze, M. A. M. Groenen and D. J. de Koning 2015
Estimating genetic parameters for fertility in dairy cows from in-line milk progesterone profiles Journal of Dairy Science A.M.M. Tenghe, A.C. Bouwman, B. Berglund, E. Strandberg, J.Y. Blom, R.F. Veerkamp 2015
Imputation of genotypes in Danish purebred and two-way crossbred pigs using low-density panels Genetics Selection Evolution T. Xiang, P. Ma, T. Ostersen, A. Legarra, O. F. Christensen 2015
Runs of homozygosity and distribution of functional variants in the cattle genome BMC Genomics Q. Zhang, B. Guldbrandtsen, M. Bosse, M. Lund, G. Sahana 2015
Genome-wide association study and biological pathway analysis of the Eimeria maxima response in broilers Genetics Selection Evolution E. Hamzic, B. Buitenhuis, F. Hérault, R. Hawken, M.S. Abrahamsen, B. Servin, J.M. Elsen, M.H. Pinard-van der Laan, B. Bed’Hom 2015
Estimation of inbreeding using pedigree, 50k SNP chip genotypes and full sequence data in three cattle breeds BMC Genetics Q. Zhang, M. P. L. Calus, B. Guldbrandtsen, M. Lund, G. Sahana 2015
Fine mapping of a calving QTL on Bos taurus autosome 18 in Holstein cattle Journal of Animal Breeding and Genetics X. Mao, N.K. Kadri, J.R. Thomasen, D.J. De Koning, G. Sahana & B. Guldbrandtsen 2015
Genome-wide association study reveals regions associated with gestation length in two pig populations Animal Genetics A. M. Hidalgo, M.S. Lopes, B. Harlizius & J.W.M. Bastiaansen 2015
Effect of specialization on genetic parameters of studbook–entry inspection in Dutch Warmblood horses. Journal of Animal Breeding and Genetics G. Rovere, P. Madsen, E. Norberg, J.A.M. van Arendonk B.J. Ducro 2015
Interchangeability between methane measurements in dairy cows assessed by comparing precision and agreement of two non-invasive infrared methods Computers and Electronics in Agriculture G. F. Difford, J. Lassen, P. Løvendhal 2015
Genome-wide association study of insect bite hypersensitivity in Swedish-born Icelandic horses Journal of Heredity M. Shrestha, S. Eriksson, A. Schurink, L. S. Andersson, M. Sundquist, R. Frey, H. Broström, T. Bergström, B. J. Ducro, and G. Lindgren 2015
Genotype by environment interaction for activity-based estrus traits in relation to production level for Danish Holstein Journal of Dairy Science, Vol. 99, 9834- 9844 Ahmed Ismael, Erling Strandberg, Britt Berglund, Morten Kargo, Anders Fogh, Peter Løvendahl 2015
Estrus Traits Derived From Activity Measurements Are Heritable And Closely Related To The Time From Calving To First Insemination Journal of Dairy Science, Vol. 98, 3470-3477 article - Selected as an “Editor’s Choice” Ahmed Ismael, Erling Strandberg, Morten Kargo, Anders Fogh, Peter Løvendahl 2015
Genotype by environment interaction for the interval from calving to first insemination with regard to calving month and geographic location in Holstein cows in Denmark and Sweden Journal of Dairy Science, Vol. 99, 5498–5507 Ahmed Ismael, Erling Strandberg, Britt Berglund, Morten Kargo, Anders Fogh, Peter Løvendahl 2016
Seasonality of fertility measured by physical activity traits in Holstein cows Journal of Dairy Science, Vol. 99, 2837-2848 Ahmed Ismael, Erling Strandberg, Britt Berglund, Anders Fogh, Peter Løvendahl 2016
Whole-genome sequence data uncover loss of genetic diversity due to selection Genetics Selection Evolution S. E. Eynard, J. J. Windig, S. J. Hiemstra and M. P. L. Calus 2016
Analysis of competition performance in dressage and show jumping of Dutch Warmblood horses. Journal of Animal Breeding and Genetics G. Rovere, B. J. Ducro, J.A.M. van Arendonk, E. Norberg, P. Madsen 2016
Pedigree analysis for the genetic management of group-living species. Ecology and Evolution Jiménez-Mena, B., Schad, K., Hanna, N. & Lacy, R. C. 2016
Heterogeneity in effective population size and its implications in conservation genetics and animal breeding. Conservation Genetics Resources Jiménez-Mena, B., Hospital, F. & Bataillon, T. 2016
Genome-wide association study for longevity with whole-genome sequencing in 3 cattle breeds Journal of Dairy Science Zhang Q., Guldbrandtsen B., Thomasen J. R., et al. 2016
Using sequence variants in linkage disequilibrium with causative mutations to improve across breed prediction in dairy cattle: a simulation study G3: Genes - Genomes - Genetics I. van den Berg, D. Boichard, B. Guldbrandtsen, M.S. Lund. 2016
Genetic parameters for dry matter intake in primiparous Holstein, Nordic Red, and Jersey cows in the first half of lactation Journal of Dairy Science B. Li, W. F. Fikse, J. Lassen, M.H. Lidauer, P. Løvendahl, P. Mäntysaari, B. Berglund 2016
RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations BMC Genomics E. Hamzic, R.B. Kjærup, N. Mach, G. Minozzi, F. Strozzi, V. Gualdi, J.L. Williams, J. Chen, E. Wattrang, B. Buitenhuis, H.R. Juul-Madsen, T.S. Dalgaard 2016
Comparing power and precision of within and multi breed genome wide association studies of production traits using whole genome sequence data for five French and Danish dairy cattle breeds Journal of Dairy Science I. van den Berg, D. Boichard, M.S. Lund. 2016
Genetic parameters for uniformity of harvest weight and body size traits in the GIFT strain of Nile tilapia Genetics Selection Evolution J. Marjanovic, H.A. Mulder, H.L. Khaw, P. Bijma 2016
One size fits all? Direct evidence for the heterogeneity of genetic drift throughout the genome Biology Letters Jiménez-Mena, B.; Tataru, P.; Brøndum, R. F.; Sahana, G.; Guldbrandtsen, B. & Bataillon, T. 2016
Genome-wide association study for endocrine fertility traits using single nucleotide polymorphism arrays and sequence variants in dairy cattle Journal of Dairy Science A.M.M. Tenghe, A.C. Bouwman, B. Berglund, E. Strandberg, D.J. de Koning, R.F. Veerkamp 2016
Sequence variants selected from a multi breed GWAS can improve the reliability of genomic prediction in dairy cattle Genetics Selection Evolution I. van den Berg, D. Boichard, M.S. Lund 2016
Genetic origin, admixture and population history of aurochs (Bos primigenius) and primitive European cattle Heredity www.nature.com M.R. Upadhyay, W. Chen, J.A. Lenstra, C.R.J Goderie, D.E. MacHugh, S.D.E Park, D.A. Magee, D. Matassino, F. Ciani, H-J. Megens, J.A.M. van Arendonk, M.A.M. Groenen, European Cattle Genetic Diversity Consortium and RPMA Crooijmans 2016
Genome-wide association studies of growth traits in three dairy cattle breeds using whole-genome sequence data. Journal of Animal Science X. Mao, G. Sahana, D.J. De Koning, and B. Guldbrandtsen 2016
Imputation of markers on the Bovine X chromosome Journal of Dairy Science X. Mao, A. M. Johansson, G. Sahana, B. Guldbrandtsen, and D.J. de Koning 2016
The relationships among bovine αS-casein phosphorylation isoforms suggest different phosphorylation pathways Journal of Dairy Science Z.H. Fang, M.H. Visker, G. Miranda, A. Delacroix-Buchet, H. Bovenhuis, P. Martin 2016
Using an inbred horse breed in a high density genome-wide scan for genetic risk factors of insect bite hypersensitivity (IBH) PLOS one B. D. Velie, M. Shrestha, L. Francois, A. Schurink, Y. G. Tesfayonas, A. Stinckens, S. Blott, B. J. Ducro, S. Mikko, R. Thomas, J. E. Swinburne, M. Sundquist, S. Eriksson, N. Buys, and G. Lindgren 2016
Comparison of gene-based rare variant association mapping methods for quantitative traits in a bovine population with complex familial relationships Genetics Selection Evolution Q. Zhang, B. Guldbrandtsen, M.P. Calus, M.S. Lund, G. Sahana 2016
Application of single-step genomic evaluation for crossbred performance in pig Journal of Animal Sciences T. Xiang, B. Nielsen, G. Su, A. Legarra and O. F. Christensen 2016
Genomic evaluation by including dominance effects and inbreeding depression for purebred and crossbred performance with an application in pigs Genetics Selection Evolution T. Xiang, O. F. Christensen, Z. Vetezica and A. Legarra 2016
Identification of QTL on chromosome 18 associated with non-coagulating milk in Swedish Red cows Frontiers in genetics S.I. Duchemin, M. Glantz, D.J. De Koning, M. Paulsson and W.F. Fikse 2016
Short communication: Multi-trait estimation of genetic parameters for milk protein composition in the Danish Holstein Journal of Dairy Science G. Gebreyesus , M.S. Lund, L. Janss, N.A. Poulsen, L.B. Larsen, H. Bovenhuis, A.J. Buitenhuis 2016
A reverse genetic approach identifies an ancestral frameshift mutation in RP1 causing recessive progressive retinal degeneration in European cattle breeds Genetic Selection Evolution P Michot, S Chahory, A Marete, C Grohs, D Dagios, E Donzel, A Aboukadiri, M Deloche, A Bonnet, M Chambrial, S Barbey, L Genestout, M Boussaha, C Danchin-Burge, S Fritz, D Boichard, A Capitan 2016
Estimation of genetic diversity in Gute sheep: pedigree and microsatellite analyses of an ancient Swedish breed Hereditas C. M. Rochus, A. M. Johansson 2017
Simultaneous genetic evaluation of simulated mastitis susceptibility and recovery ability using a bivariate threshold sire model Acta Agriculturae Scandinavica, Section A - Animal Science B. G. Welderufael, D.J. de Koning, L.L.G. Jans, J. Franzén, W.F. Fikse 2017
Merging pedigree databases to describe and compare mating practices and gene flow between pedigree dogs in France Journal of Animal Breeding and Genetics S. Wang, G. Leroy, S. Malm, T. Lewis, E. Strandberg & W. F. Fikse 2017
Genomic evaluation for crossbred performance in a single-step approach with metafounders Journal of Animal Science T. Xiang, O. F. Christensen and A. Legarra 2017
Bivariate threshold models for genetic evaluation of susceptibility to and ability to recover from mastitis in Danish Holstein cows Journal of Dairy Science B.G. Welderufael, L.L.G. Janss, D.J. de Koning, L.P. Sørensen, P. Løvendahl, W.F. Fikse 2017
Genetic and nongenetic factors contributing to differences in αS-casein phosphorylation isoforms and other major milk proteins Journal of Dairy Science Z.H. Fang, H. Bovenhuis, A. Delacroix-Buchet, G. Miranda, D. Boichard, M.H. Visker, P. Martin 2017
The effect of selection and sex on genetic parameters of body weight at different ages in a commercial broiler chicken population Journal of Lifestock Science W. Mebratie, M. Shirali, P. Madsen, R.L. Sapp, R. Hawken, J. Jensen 2017
Contribution of rare and low-frequency whole-genome sequence variants to complex traits variation in dairy cattle Genetics Selection Evolution Q. Zhang, P L M. Calus, B. Guldbrandtsen, M.S. Lund, G. Sahana 2017
Genetic correlations of hip dysplasia scores for Golden retrievers and Labrador retrievers in France, Sweden and the UK The Veterinary Journal S. Wang, G. Leroy, S. Malm, T. Lewis, Å. Viklund, E. Strandberg & W. F. Fikse 2017
Neglect of lactation stage leads to naive assessment of residual feed intake in dairy cattle Journal of Dairy Science B. Li, B. Berglund, W. F. Fikse, J. Lassen, M. H. Lidauer, P. Mäntysaari, P. Løvendahl 2017
Genome-wide mapping of large deletions and their population-genetic properties in dairy cattle DNA Research M.M. Uddin, B. Guldbrandtsen, T. Iso-Touru, J. Vilkki, D.-J. De Koning, D. Boichard, M.S. Lund, G, Sahana 2017
Modeling heterogeneous (co)variances from adjacent-SNP groups improves genomic prediction for scarcely recorded milk protein composition traits Genetics Selection Evolution G. Gebreyesus, Lund M.S., Buitenhuis A.J., Bovenhuis H., Poulsen N.A. and Janss L.G. 2017
Predicting methane emissions of lactating Danish Holstein cows using Fourier transform mid-infrared spectroscopy of milk Journal of Dairy Science Shetty, N., Difford, G., Lassen, J., Løvendahl, P., & Buitenhuis, A. J. 2017
Distribution and Functionality of Copy Number Variation across European Cattle Populations Frontiers in Genetics Maulik Upadhyay, Vinicus H. da Silva, Hendrik-Jan Megens, Marleen H. P. W. Visker, Paolo Ajmone-Marsan, Valentin A. Bâlteanu, Susana Dunner, Jose F. Garcia, Catarina Ginja, Juha Kantanen, Martien A. M. Groenen and Richard P. M. A. Crooijmans 2017
Genome-wide mapping of large deletions and their population-genetic properties in dairy cattle DNA Research Mesbah-Uddin, M., B. Guldbrandtsen, T. Iso-Touru, J. Vilkki, D. J. De Koning, D. Boichard, M. S. Lund and G. Sahana 2017
Distribution and Functionality of Copy Number Variation across European Cattle Populations Frontiers in genetics Maulik Upadhyay, Vinicus H. da Silva, Hendrik-Jan Megens, Marleen H. P. W. Visker, Paolo Ajmone-Marsan, Valentin A. Bâlteanu, Susana Dunner, Jose F. Garcia, Catarina Ginja, Juha Kantanen, Martien A. M. Groenen and Richard P. M. A. Crooijmans 2017
Revealing the selection history of adaptive loci using genome-wide scans for selection: an example from domestic sheep BMC Genomics C.M. Rochus, F. Tortereau, F. Plisson-Petit, G. Restoux, C. Moreno-Romieux, G. Tosser-Klopp, B. Servin 2018
Genome-Wide Association Study for Susceptibility to and Recoverability From Mastitis in Danish Holstein Cows Frontiers in Genetics B. G. Welderufael, Peter Løvendahl, Dirk-Jan de Koning, Lucas L. G. Janss and W. F. Fikse 2018
Exploring dominance and epistatic variance components in four French and Danish dairy cattle breeds 11thWorld Congress on Genetics Applied to Livestock Production A Marete, L Janss, B Guldbrandtsen, C Hoze, G Sahana, D Boichard, MS Lund 2018
Kennel club survey on breeding policy and management on pedigree dogs in 15 national kennel clubs The Veterinary Journal S. Wang, G. Leroy, D. Laloë, S. Malm, T. Lewis, F. Missant, E. Strandberg, B. Brenda 2018
Is rumination time an indicator of methane production in dairy cows? Journal of Dairy Science Zetouni, L., Difford, G.F., Lassen, J., Byskov, M. V., Norberg, E. & Løvendahl, P. 2018
Microbiability–new insights into (genetic) modelling methane emissions of cattle Proceedings of 11th World Congress on Genetics Applied to Livestock Production Difford, G. F., Løvendahl, P., Lassen, J., Guldbrandtsen, B., & Sahana, G. 2018
Selecting for improved feed efficiency and reduced methane emissions in dairy cattle (a review) Animal Løvendahl, P., Difford, G.F., Li, B., Chagunda, M.G.G., Huhtanen, P., Lidauer, M.H., Lassen, J., & P. Lund 2018
Host genetics and the rumen microbiome jointly associate with methane emissions in dairy cows PLOS Genetics Difford, G.F., Plichta, D.P., Løvendahl, P., Lassen, J., Noel, S.J., Højberg, O., Wright, A.D.G., Zhu, Z., Kristensen, L., Nielsen, H.B., Guldbrandtsen, B., & Sahana, G. 2018
Comparison of a laser methane detector with the GreenFeed and two breath analysers for on-farm measurements of methane emissions from dairy cows Computers and Electronics in Agriculture Sorg, D., Difford, G.F., Mühlbach, S., Kuhla, B., Swalve, H.H., Lassen, J., Strabel, T., & Pszczola, M. 2018
A system-based analysis of the genetic determinism of udder conformation and health phenotypes across three French dairy cattle breeds PLOS ONE A Marete, MS Lund, D Boichard, Y Ramayo-Caldas 2018
Genome-wide association study for milking speed in French Holstein cows Journal of Dairy Science A Marete, G Sahana, S Fritz, R Lefebvre, A Barbat, MS Lund, B Guldbrandtsen, D Boichard 2018
A meta-analysis including pre-selected sequence variants associated with seven traits in three French dairy cattle populations Frontiers in Genetics A Marete, B Guldbrandtsen, MS Lund, S Fritz, G Sahana, D Boichard 2018
Exploring dominance and epistatic variance components in four French and Danish dairy cattle breeds 11thWorld Congress on Genetics Applied to Livestock Production A Marete, L Janss, B Guldbrandtsen, C Hoze, G Sahana, D Boichard, MS Lund 2018
Genome-wide population structure and admixture analysis reveals weak differentiation among Ugandan goat breeds (2018) Animal Genetics R. B. Onzima, M. R. Upadhyay, R. Mukiibi, E. Kanis, M. A. M. Groenen and R. P. M. A. Crooijmans 2018
Genome-wide Characterization of Selection Signatures and Runs of Homozygosity in Ugandan Goat Breeds Frontiers in Genetics R. B. Onzima, M. R. Upadhyay, H. P. Doekes, L.F. Brito, M. Bosse, E. Kanis, M. A. M. Groenen and R. P. M. A. Crooijmans 2018
Benefits of testing in both bio-secure and production environments in genomic selection breeding programs for commercial broiler chicken Genetics Selection Evolution Chu T.T., Alemu S.W., Norberg E., Sørensen A.C., Henshall J., Hawken R., Jensen J. 2018
On farm observations to increase genetic gain in breeding schemes for village poultry production – A simulation study Acta Agriculturae Scandinavica, Section A — Animal Science Chu T.T., Bastiaansen J.W.M., Norberg E., Berg P. 2018
Detection of candidate regions affecting bovine IgM natural antibodies in milk Proceedings of the World Congress on Genetics Applied to Livestock Production Cordero-Solorzano, J.M., Arts, J.A.J., Parmentier, H.K. & Bovenhuis, H. 2018
Genotype call for chromosomal deletions using read-depth from whole genome sequence variants in cattle Proceedings of the World Congress on Genetics Applied to Livestock Production, Auckland, New Zealand Mesbah-Uddin, M., B. Guldbrandtsen, M. S. Lund and G. Sahana 2018
Copy number variations in Friesian horses and genetic risk factors for insect bite hypersensitivity BMC Genetics Anouk Schurink, Vinicius H. da Silva, Brandon D. Velie, Bert W. Dibbits, Richard P. M. A. Crooijmans, Liesbeth Franҫois, Steven Janssens, Anneleen Stinckens, Sarah Blott, Nadine Buys, Gabriella Lindgren & Bart J. Ducro 2018
CNVs are associated with genomic architecture in a songbird BMC genomics Vinicius H. da Silva, Veronika N. Laine, Mirte Bosse, Kees van Oers, Bert Dibbits, Marcel E. Visser, Richard P. M. A. Crooijmans & Martien A. M. Groenen 2018
Use of genomic information to exploit genotype by environment interactions for body weight of broiler chicken in bio-secure and production environments Genetics Selection Evolution Chu, T.T., Bastiaansen J.W.M., Berg P., Rome H.J.S., D. Marois, Henshall J., Jensen J. 2019
Genetic analysis on body weight at different ages in broiler chicken raised in commercial environment Journal of Animal Breeding and Genetics Chu T.T., Madsen P., Norberg E., Wang L., Marois D., Henshall J., Jensen J. 2019
Optimized grouping to increase accuracy of prediction from group records in genomic selection breeding programs Genetics Selection Evolution Chu, T.T., Bastiaansen J.W.M., Berg P., Komen H. 2019
Transcriptome variation in response to gastrointestinal nematode infection in goats PLoS One Aboshady H. M., N. Mandonnet, M. J. Stear, R. Arquet, M. Bederina, J. Sarry, G. Tosser-Klopp, C. Klopp, A. M. Johansson, E. Jonas, J.C. Bambou 2019
Immunoglobulins as Biomarkers for Gastrointestinal Nematodes Resistance in Small Ruminants: A systematic review and meta-analysis Scientific Reports Aboshady H. M., M.J. Stear, A. M. Johansson, E. Jonas, J.C. Bambou 2019
Dynamic transcriptomic changes of goat abomasal mucosa in response to Haemonchus contortus infection Veterinary Research Hadeer M. Aboshady; Nathalie Mandonnet; Yoann Félicité; Julien Hira; Aurore Fourcot; Claude Barbier; Anna M. Johansson; Elisabeth Jonas; Jean-Cristophe Bambou 2019
Genomic variants from RNA-seq for goats resistant or susceptible to gastrointestinal nematode infection BMC Genomics Hadeer M. Aboshady; Nathalie Mandonnet; Anna M. Johansson; Elisabeth Jonas; Jean-Christophe BAMBOU 2019
Genome-wide association study identifies loci influencing natural antibody titers in milk of Dutch Holstein-Friesian cattle Journal of Dairy Science Cordero-Solórzano, J., Parmentier, H.K., Arts, J.A.J., van der Poel, J., de Koning, D.J. & Bovenhuis, H. 2019
A missense mutation (p.Tyr452Cys) in the CAD gene compromises reproductive success in French Normande cattle Journal of Dairy Science Mesbah-Uddin, M., C. Hozé, P. Michot, A. Barbat, R. Lefebvre, M. Boussaha, G. Sahana, S. Fritz, D. Boichard and A. Capitan 2019
Joint imputation of whole-genome sequence variants and large chromosomal deletions in cattle Journal of Dairy Science Mesbah-Uddin, M., B. Guldbrandtsen, M. S. Lund, D. Boichard and G. Sahana 2019
Haplotypes responsible for early embryonic lethality detected in Nordic Holsteins Journal of Dairy Science Wu, X., M. Mesbah-Uddin, B. Guldbrandtsen, M. S. Lund and G. Sahana 2019
Short Communication: A splice site mutation in CENPU is associated with recessive embryonic lethality in Holstein cattle Journal of Dairy Science Hoze, C., C. Escouflaire, M. Mesbah-Uddin, A. Barbat, M. Boussaha, M. C. Deloche, D. Boichard, S. Fritz and A. Capitan 2019
The Genomic Complexity of a Large Inversion in Great Tits Genome Biology and Evolution Vinicius H da Silva, Veronika N Laine, Mirte Bosse, Lewis G Spurgin, Martijn F L Derks, Kees van Oers, Bert Dibbits, Jon Slate, Richard P M A Crooijmans, Marcel E Visser 2019
CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes Oxford Bioinformatics Vinicius da Silva, Marcel Ramos, Martien Groenen, Richard Crooijmans, Anna Johansson, Luciana Regitano, Luiz Coutinho, Ralf Zimmer, Levi Waldron, Ludwig Geistlinger 2019
Mutation dynamics of CpG dinucleotides during a recent event of vertebrate diversification Epigenetics Fábio Pértille, Vinicius H. Da Silva, Anna M. Johansson, Tom Lindström,Dominic Wright, Luiz L. Coutinho, Per Jensen & Carlos Guerrero-Bosagna 2019
Genome-wide association study with imputed whole-genome sequence variants including large deletions for female fertility in three Nordic dairy breeds Manuscript (in preparation for publication) Mesbah-Uddin, M., B. Guldbrandtsen, A. Capitan, M. S. Lund, D. Boichard and G. Sahana

(updated November 2019)


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